PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00816.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 262aa    MW: 29541 Da    PI: 6.8984
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00816.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59e-2091140255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae Aa a+++a++k++g
  Rsa1.0_00816.1_g00002.1  91 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAEAAALAYDEAALKFKG 140
                              7********.**********93....36************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.1E-3390149IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-2291149IPR016177DNA-binding domain
PROSITE profilePS5103224.94891148IPR001471AP2/ERF domain
SMARTSM003804.7E-3791154IPR001471AP2/ERF domain
PfamPF008476.3E-1491140IPR001471AP2/ERF domain
CDDcd000182.69E-2091149No hitNo description
PRINTSPR003671.7E-1192103IPR001471AP2/ERF domain
PRINTSPR003671.7E-11114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MANQRNYGKM PFLAGESEEK KEVDDEENIF PFLSARSQYD TRAMVSALTQ VIGNQSSTHD  60
TNQHHPVEYN QQDPIQHVPP TQDQGNLRKR HYRGVRQRPW GKWAAEIRDP QKAARVWLGT  120
FETAEAAALA YDEAALKFKG SKAKLNFPER AQLASNTSTI TGPPNYYSSN NQIYYSNPQT  180
NPGQTIPYYN QYYYNQYLQQ GGNNNDSLSY SLASGETGGS MYNHQSLSTT TSSSSGGSSR  240
QQQEQDYARF WHFGDSSPNS GF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2690150162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937410.0AB493741.1 Arabidopsis thaliana At5g07310 mRNA for hypothetical protein, partial cds, clone: RAAt5g07310.
GenBankAY5608850.0AY560885.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g07310) mRNA, complete cds.
GenBankBT0257170.0BT025717.1 Arabidopsis thaliana At5g07310 mRNA, complete cds.
GenBankDQ6532680.0DQ653268.1 Arabidopsis thaliana clone 0000012872_0000009284 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399213.11e-141hypothetical protein EUTSA_v10015583mg
RefseqXP_009122352.11e-141PREDICTED: ethylene-responsive transcription factor ERF115
RefseqXP_013715453.11e-141PREDICTED: ethylene-responsive transcription factor ERF115-like
RefseqXP_013722544.11e-141PREDICTED: ethylene-responsive transcription factor ERF115-like
SwissprotQ9LY291e-137EF115_ARATH; Ethylene-responsive transcription factor ERF115
TrEMBLA0A078C0251e-141A0A078C025_BRANA; BnaA10g23760D protein
STRINGBra009272.1-P1e-141(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52921851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.11e-102ERF family protein